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hidden markov model (hmm) profiles of ring domains  (InterPro Inc)

 
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    InterPro Inc hidden markov model (hmm) profiles of ring domains
    The types and features of <t> RING domains </t> in G. hirsutum .
    Hidden Markov Model (Hmm) Profiles Of Ring Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/hidden+markov+model+%28hmm%29+profiles+of+ring+domains/pmc11720228-185-9-22?v=InterPro+Inc
    Average 90 stars, based on 1 article reviews
    hidden markov model (hmm) profiles of ring domains - by Bioz Stars, 2026-08
    90/100 stars

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    1) Product Images from "Systematic Analysis of Cotton RING E3 Ubiquitin Ligase Genes Reveals Their Potential Involvement in Salt Stress Tolerance"

    Article Title: Systematic Analysis of Cotton RING E3 Ubiquitin Ligase Genes Reveals Their Potential Involvement in Salt Stress Tolerance

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms26010359

    The types and features of RING domains in G. hirsutum .
    Figure Legend Snippet: The types and features of RING domains in G. hirsutum .

    Techniques Used: Sequencing

    Distance variation between ml pairs in G. hirsutum RING domains. ( A ) Distance variation between ml pairs ml1–ml2, ml3–ml4, ml4–ml5, ml5–ml6, and ml7–ml8. ( B ) Comparison of the number of amino acids in the loops between ml2 and ml3, and ml6 and ml7 of the RING-H2, RING-HCa, RING-HCb, RING-v, and RING-C2 domains. ml denotes metal ligand. Xn indicates the number of amino acids observed between two conserved metal ligands.
    Figure Legend Snippet: Distance variation between ml pairs in G. hirsutum RING domains. ( A ) Distance variation between ml pairs ml1–ml2, ml3–ml4, ml4–ml5, ml5–ml6, and ml7–ml8. ( B ) Comparison of the number of amino acids in the loops between ml2 and ml3, and ml6 and ml7 of the RING-H2, RING-HCa, RING-HCb, RING-v, and RING-C2 domains. ml denotes metal ligand. Xn indicates the number of amino acids observed between two conserved metal ligands.

    Techniques Used: Comparison

    Expression profiles of the 144 G. hirsutum RING genes under salinity stress. Expression patterns of G. hirsutum RING genes determined from reanalysis of publicly available transcriptome data from the roots of cotton cultivar GX100-2 (SRP343057). The heat map was constructed based on transcript levels, calculated as fragments per kilobase of the exon model per million mapped fragments (FPKM). DEGs were identified using the DESeq2 R packages (1.16.1), with a cutoff of |log 2 FC | ≥ 1 and P -adj ≤ 0.05. The selection of these 144 RING genes was based on their differential expression in at least two salt stress time points. The values marked on round rectangles correspond to the log 2 FC values. The scale represents the relative expression levels, with red indicating higher expression and blue indicating lower expression. The RING genes highlighted in pale blue are tandemly duplicated genes.
    Figure Legend Snippet: Expression profiles of the 144 G. hirsutum RING genes under salinity stress. Expression patterns of G. hirsutum RING genes determined from reanalysis of publicly available transcriptome data from the roots of cotton cultivar GX100-2 (SRP343057). The heat map was constructed based on transcript levels, calculated as fragments per kilobase of the exon model per million mapped fragments (FPKM). DEGs were identified using the DESeq2 R packages (1.16.1), with a cutoff of |log 2 FC | ≥ 1 and P -adj ≤ 0.05. The selection of these 144 RING genes was based on their differential expression in at least two salt stress time points. The values marked on round rectangles correspond to the log 2 FC values. The scale represents the relative expression levels, with red indicating higher expression and blue indicating lower expression. The RING genes highlighted in pale blue are tandemly duplicated genes.

    Techniques Used: Expressing, Construct, Selection, Quantitative Proteomics



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    hidden markov model (hmm) profiles of ring domains  (InterPro Inc)
    90
    InterPro Inc hidden markov model (hmm) profiles of ring domains
    The types and features of <t> RING domains </t> in G. hirsutum .
    Hidden Markov Model (Hmm) Profiles Of Ring Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/hidden+markov+model+%28hmm%29+profiles+of+ring+domains/pmc11720228-185-9-22?v=InterPro+Inc
    Average 90 stars, based on 1 article reviews
    hidden markov model (hmm) profiles of ring domains - by Bioz Stars, 2026-08
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    The types and features of RING domains in G. hirsutum .

    Journal: International Journal of Molecular Sciences

    Article Title: Systematic Analysis of Cotton RING E3 Ubiquitin Ligase Genes Reveals Their Potential Involvement in Salt Stress Tolerance

    doi: 10.3390/ijms26010359

    Figure Lengend Snippet: The types and features of RING domains in G. hirsutum .

    Article Snippet: In addition, the Hidden Markov Model (HMM) profiles of RING domains (PF00097, PF12906, PF13639, PF13923, PF13920, and PF15227) were downloaded from the InterPro database ( http://www.ebi.ac.uk/interpro/ , (accessed on 20 November 2023)) [ ], which was queried to identify RING protein sequences in the above three cotton species using the HMMER program (v3.3.2, http://www.hmmer.org/ , (accessed on 20 November 2023)), with E -value ≤ e − 10 .

    Techniques: Sequencing

    Distance variation between ml pairs in G. hirsutum RING domains. ( A ) Distance variation between ml pairs ml1–ml2, ml3–ml4, ml4–ml5, ml5–ml6, and ml7–ml8. ( B ) Comparison of the number of amino acids in the loops between ml2 and ml3, and ml6 and ml7 of the RING-H2, RING-HCa, RING-HCb, RING-v, and RING-C2 domains. ml denotes metal ligand. Xn indicates the number of amino acids observed between two conserved metal ligands.

    Journal: International Journal of Molecular Sciences

    Article Title: Systematic Analysis of Cotton RING E3 Ubiquitin Ligase Genes Reveals Their Potential Involvement in Salt Stress Tolerance

    doi: 10.3390/ijms26010359

    Figure Lengend Snippet: Distance variation between ml pairs in G. hirsutum RING domains. ( A ) Distance variation between ml pairs ml1–ml2, ml3–ml4, ml4–ml5, ml5–ml6, and ml7–ml8. ( B ) Comparison of the number of amino acids in the loops between ml2 and ml3, and ml6 and ml7 of the RING-H2, RING-HCa, RING-HCb, RING-v, and RING-C2 domains. ml denotes metal ligand. Xn indicates the number of amino acids observed between two conserved metal ligands.

    Article Snippet: In addition, the Hidden Markov Model (HMM) profiles of RING domains (PF00097, PF12906, PF13639, PF13923, PF13920, and PF15227) were downloaded from the InterPro database ( http://www.ebi.ac.uk/interpro/ , (accessed on 20 November 2023)) [ ], which was queried to identify RING protein sequences in the above three cotton species using the HMMER program (v3.3.2, http://www.hmmer.org/ , (accessed on 20 November 2023)), with E -value ≤ e − 10 .

    Techniques: Comparison

    Expression profiles of the 144 G. hirsutum RING genes under salinity stress. Expression patterns of G. hirsutum RING genes determined from reanalysis of publicly available transcriptome data from the roots of cotton cultivar GX100-2 (SRP343057). The heat map was constructed based on transcript levels, calculated as fragments per kilobase of the exon model per million mapped fragments (FPKM). DEGs were identified using the DESeq2 R packages (1.16.1), with a cutoff of |log 2 FC | ≥ 1 and P -adj ≤ 0.05. The selection of these 144 RING genes was based on their differential expression in at least two salt stress time points. The values marked on round rectangles correspond to the log 2 FC values. The scale represents the relative expression levels, with red indicating higher expression and blue indicating lower expression. The RING genes highlighted in pale blue are tandemly duplicated genes.

    Journal: International Journal of Molecular Sciences

    Article Title: Systematic Analysis of Cotton RING E3 Ubiquitin Ligase Genes Reveals Their Potential Involvement in Salt Stress Tolerance

    doi: 10.3390/ijms26010359

    Figure Lengend Snippet: Expression profiles of the 144 G. hirsutum RING genes under salinity stress. Expression patterns of G. hirsutum RING genes determined from reanalysis of publicly available transcriptome data from the roots of cotton cultivar GX100-2 (SRP343057). The heat map was constructed based on transcript levels, calculated as fragments per kilobase of the exon model per million mapped fragments (FPKM). DEGs were identified using the DESeq2 R packages (1.16.1), with a cutoff of |log 2 FC | ≥ 1 and P -adj ≤ 0.05. The selection of these 144 RING genes was based on their differential expression in at least two salt stress time points. The values marked on round rectangles correspond to the log 2 FC values. The scale represents the relative expression levels, with red indicating higher expression and blue indicating lower expression. The RING genes highlighted in pale blue are tandemly duplicated genes.

    Article Snippet: In addition, the Hidden Markov Model (HMM) profiles of RING domains (PF00097, PF12906, PF13639, PF13923, PF13920, and PF15227) were downloaded from the InterPro database ( http://www.ebi.ac.uk/interpro/ , (accessed on 20 November 2023)) [ ], which was queried to identify RING protein sequences in the above three cotton species using the HMMER program (v3.3.2, http://www.hmmer.org/ , (accessed on 20 November 2023)), with E -value ≤ e − 10 .

    Techniques: Expressing, Construct, Selection, Quantitative Proteomics